annealing_find_ecology_parameters	annealing_find_ecology_parameters
annealing_find_gear_activity_mult_ecosystem_target	annealing_find_gear_activity_mult_ecosystem_target
annealing_find_gear_activity_mult_HR_target	annealing_find_gear_activity_mult_HR_target
annealing_find_harvest_ratio_mult	annealing_find_harvest_ratio_mult
assemble_flow_matrix_from_model_annual_output	assemble_flow_matrix_from_model_annual_output
box_and_whisker_annual_plots	box_and_whisker_annual_plots
box_and_whisker_annual_plots_with_credible_intervals	box_and_whisker_annual_plots_with_credible_intervals
box_and_whisker_monthly_plots	box_and_whisker_monthly_plots
box_and_whisker_monthly_plots_with_credible_intervals	box_and_whisker_monthly_plots_with_credible_intervals
build_annual_drivers	build_annual_drivers
build_initial_state	build_initial_state
build_model_parameters	build_model_parameters
build_model_run	build_model_run
calculate_error_function	calculate_error_function
calculate_hr_scale_values	calculate_hr_scale_values
calculate_uptakes	calculate_uptakes
compare_two_runs_aam	compare_two_runs_aam
compare_two_runs_catch	compare_two_runs_catch
concatenate_raw_sensitivity_analysis_results	concatenate_raw_sensitivity_analysis_results
copy_model	copy_model
CredInt_make_aamass_results	CredInt_make_aamass_results
CredInt_make_annual_flux_results	CredInt_make_annual_flux_results
CredInt_make_daily_flux_results	CredInt_make_daily_flux_results
CredInt_make_daily_migration_results	CredInt_make_daily_migration_results
CredInt_make_daily_results	CredInt_make_daily_results
CredInt_make_monthly_results	CredInt_make_monthly_results
CredInt_make_network_results	CredInt_make_network_results
CredInt_make_parameter_results	CredInt_make_parameter_results
CredInt_make_target_results	CredInt_make_target_results
derive_annual_results_inshore	derive_annual_results_inshore
derive_annual_results_offshore	derive_annual_results_offshore
derive_annual_results_wholedomain	derive_annual_results_wholedomain
derive_model_target_results	derive_model_target_results
disaggregate_landings_discards_by_gear	disaggregate_landings_discards_by_gear
extract_final_year_of_run_plus_volumetric_data	extract_final_year_of_run_plus_volumetric_data
extract_new_initial_cond_from_end_of_run	extract_new_initial_cond_from_end_of_run
extract_simulated_catch_land_disc_by_gear_for_given_year	extract_simulated_catch_land_disc_by_gear_for_given_year
extract_timeseries_annual_landings	extract_timeseries_annual_landings
fishing_fleet_model	fishing_fleet_model
interpolate_drivers	interpolate_drivers
list_models	list_models
Monte_Carlo_StrathE2E	Monte_Carlo_StrathE2E
monthly_averages_of_final_year	monthly_averages_of_final_year
perturb_parameters	perturb_parameters
perturb_parameters_all	perturb_parameters_all
plot_final_year	plot_final_year
plot_final_year_HTL_inshore_vs_offshore	plot_final_year_HTL_inshore_vs_offshore
plot_final_year_LTL_inshore_vs_offshore	plot_final_year_LTL_inshore_vs_offshore
plot_final_year_migration_data_with_credible_intervals	plot_final_year_migration_data_with_credible_intervals
plot_final_year_time_series_data_with_credible_intervals	plot_final_year_time_series_data_with_credible_intervals
plot_final_year_trophic_data_with_credible_intervals	plot_final_year_trophic_data_with_credible_intervals
plot_for_each_gear_catch_by_guild	plot_for_each_gear_catch_by_guild
plot_for_each_guild_catch_by_gear	plot_for_each_guild_catch_by_gear
plot_full_length_timeseries	plot_full_length_timeseries
plot_inshore_vs_offshore_anavmass_with_credible_intervals	plot_inshore_vs_offshore_anavmass_with_credible_intervals
plot_Monte_Carlo_parameter_distributions	plot_Monte_Carlo_parameter_distributions
plot_sediment_habitats_final_year	plot_sediment_habitats_final_year
plot_sensitivity_analysis_results	plot_sensitivity_analysis_results
plot_time_series_annual_land_disc	plot_time_series_annual_land_disc
process_sensitivity_analysis_results	process_sensitivity_analysis_results
process_sensitivity_analysis_results_offline	process_sensitivity_analysis_results_offline
read_annual_target_data	read_annual_target_data
read_biological_event_timings	read_biological_event_timings
read_chemistry_drivers	read_chemistry_drivers
read_fishing_fleet_model	read_fishing_fleet_model
read_fitted_parameters	read_fitted_parameters
read_fixed_parameters	read_fixed_parameters
read_initial_state	read_initial_state
read_model	read_model
read_monthly_target_data	read_monthly_target_data
read_physical_parameters	read_physical_parameters
read_physics_drivers	read_physics_drivers
read_SD_credint	read_SD_credint
read_SD_ecology	read_SD_ecology
read_SD_fishing	read_SD_fishing
read_SD_sensitivity	read_SD_sensitivity
Sensitivity_analysis_StrathE2E	Sensitivity_analysis_StrathE2E
store_fleet_model_output	store_fleet_model_output
StrathE2E	StrathE2E
StrathE2E2	StrathE2E2-package
StrathE2E_fit	StrathE2E_fit
write_fitted_parameters	write_fitted_parameters
